Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs10789240 chr1:68290251 G/A 0.000382 176 22.63 28.47 26.18 KM Plot
PCPG rs10821558 chr9:136943228 C/T 1.82E-5 178 28.57 23.53 25.4 KM Plot
PCPG rs10821559 chr9:136943409 T/C 1.91E-5 177 25.53 23.53 28.57 KM Plot
PCPG rs10821560 chr9:136943630 T/C 1.91E-5 177 25.53 23.53 28.57 KM Plot
PCPG rs10821561 chr9:136943656 A/G 1.91E-5 177 25.53 23.53 28.57 KM Plot
PCPG rs10821562 chr9:136943657 T/G 1.91E-5 177 25.53 23.53 28.57 KM Plot
PCPG rs10829692 chr10:131950796 C/T 0 177 25.47 24.47 3.17 KM Plot
PCPG rs10829693 chr10:131950978 C/T 0 177 25.47 24.47 3.17 KM Plot
PCPG rs10829695 chr10:131953435 C/T 4.08E-9 178 25.53 24.7 3.92 KM Plot
PCPG rs10829696 chr10:131953624 A/G 4.08E-9 178 3.92 24.7 25.53 KM Plot
PCPG rs10829699 chr10:131975342 A/G 0 178 25.6 24.23 3.17 KM Plot
PCPG rs10829704 chr10:131983669 C/T 0 176 25.6 24.7 3.17 KM Plot
PCPG rs10829705 chr10:131990714 C/T 0 175 25.4 23.53 3.17 KM Plot
PCPG rs1084902 chr17:3255973 C/T 0.000226 171 18.1 25.87 26.88 KM Plot
PCPG rs1084906 chr17:3236291 A/G 0.000226 171 18.1 25.87 26.88 KM Plot